ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1vqsC1 - ECOD Domain | ECOD

ECOD/Domains/e1vqsC1

e1vqsC1

UID: 000064564

PDB

Range: C:1-104
PDB: 1VQS chain C(all domains)

Molecule: hypothetical protein AGR_L_1239

3D Structure

Loading viewer...

Related Domains

Browse other domains in NIPSNAP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupDimeric alpha+beta barrel(304.4)

TT-groupDimeric alpha+beta barrel(304.4.1)

FFamilyNIPSNAP(304.4.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF07978NIPSNAP

NIPSNAP

ClanCL0032Dim_A_B_barrel

External Links

ECOD PDB View: 1VQS RCSB PDB: 1VQS PDBe: 1VQS

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.