ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vqsE1 - ECOD Domain | ECOD

ECOD/Domains/e1vqsE1

e1vqsE1

UID: 000064577

PDB

Range: E:1-104
PDB: 1VQS chain E(all domains)

Molecule: hypothetical protein AGR_L_1239

3D Structure

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Related Domains

Browse other domains in NIPSNAP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupDimeric alpha+beta barrel(304.4)

TT-groupDimeric alpha+beta barrel(304.4.1)

FFamilyNIPSNAP(304.4.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF07978NIPSNAP

NIPSNAP

ClanCL0032Dim_A_B_barrel

External Links

ECOD PDB View: 1VQS RCSB PDB: 1VQS PDBe: 1VQS

Downloads

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