ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kdnC1 - ECOD Domain | ECOD

ECOD/Domains/e1kdnC1

e1kdnC1

UID: 000065641

PDB

Range: C:6-154
PDB: 1KDN chain C(all domains)
UniProt: P22887 (all domains)
Gene: ndkC-1

Molecule: NUCLEOSIDE DIPHOSPHATE KINASE

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Aluminum fluorideAF3
Magnesium ionMG

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 1KDN RCSB PDB: 1KDN PDBe: 1KDN UniProt: P22887

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.