ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1q9xA3 - ECOD Domain | ECOD

ECOD/Domains/e1q9xA3

e1q9xA3

UID: 000066014

PDB

Range: A:376-467,A:574-731
PDB: 1Q9X chain A(all domains)
UniProt: Q38087 (all domains)
Gene: 43

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_B(304.48.1.3)

Ligands

in contact, ≤ 4 Å

2',3'-Dideoxycytidine-5'-MonophosphateDOC
drugDrugBank DB02883
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 1Q9X RCSB PDB: 1Q9X PDBe: 1Q9X UniProt: Q38087

Downloads

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