ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1lv5A3 - ECOD Domain | ECOD

ECOD/Domains/e1lv5A3

e1lv5A3

UID: 000066051

PDB

Range: A:643-667,A:792-875
PDB: 1LV5 chain A(all domains)
UniProt: P52026 (all domains)
Gene: polA

Molecule: DNA POLYMERASE I

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_A(304.48.1.6)

Ligands

in contact, ≤ 4 Å

2'-Deoxycytidine 5'-triphosphateDCP
drugDrugBank DB03258
Magnesium ionMG
metal
MANGANESE (II) ION

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 1LV5 RCSB PDB: 1LV5 PDBe: 1LV5 UniProt: P52026

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.