ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pylA2 - ECOD Domain | ECOD

ECOD/Domains/e2pylA2

e2pylA2

UID: 000066121

PDB

Range: A:188-261,A:423-574
PDB: 2PYL chain A(all domains)
UniProt: P03680 (all domains)
Gene: 2

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_B_2(304.48.1.17)

Ligands

in contact, ≤ 4 Å

Thymidine 5'-triphosphateTTP
drugDrugBank DB02452
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF03175DNA_pol_B_2

DNA polymerase type B, organellar and viral

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 2PYL RCSB PDB: 2PYL PDBe: 2PYL UniProt: P03680

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.