ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ykiD1 - ECOD Domain | ECOD

ECOD/Domains/e1ykiD1

e1ykiD1

UID: 000066641

PDB

Range: D:2-217
PDB: 1YKI chain D(all domains)
UniProt: P38489 (all domains)
Gene: nfsB

Molecule: Oxygen-insensitive NAD(P)H nitroreductase

3D Structure

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Related Domains

Browse other domains in Nitroreductase →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFMN-dependent nitroreductase-like(304.103)

TT-groupFMN-dependent nitroreductase-like(304.103.1)

FFamilyNitroreductase(304.103.1.1)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
NitrofuralNFZ
drugDrugBank DB00336

+ 2 additives (Citric acid, Dimethyl sulfoxide)

Pfam Families

PF00881Nitroreductase

Nitroreductase family

ClanCL0529FMN-dep-NRtase

External Links

ECOD PDB View: 1YKI RCSB PDB: 1YKI PDBe: 1YKI UniProt: P38489

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Citric acidCIT
DrugBank DB04272
Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.