ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1pp9O1 - ECOD Domain | ECOD

ECOD/Domains/e1pp9O1

e1pp9O1

UID: 000067289

PDB

Range: O:17-235
PDB: 1PP9 chain O(all domains)
UniProt: P23004 (all domains)
Gene: UQCRC2

Molecule: Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial

3D Structure

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Related Domains

Browse other domains in Peptidase_M16 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPeptidase_M16(309.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00675Peptidase_M16

Insulinase (Peptidase family M16)

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 1PP9 RCSB PDB: 1PP9 PDBe: 1PP9 UniProt: P23004

Downloads

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