ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1mk0A1 - ECOD Domain | ECOD

ECOD/Domains/e1mk0A1

e1mk0A1

UID: 000006806

RepresentativePDB

Range: A:1-97
PDB: 1MK0 chain A(all domains)
UniProt: P13299 (all domains)
Gene: ITEVIR

Molecule: Intron-associated endonuclease 1

3D Structure

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Related Domains

Browse other domains in GIY-YIG →

Classification

AArchitecturea+b three layers(a.12)

XX-groupGIY-YIG endonuclease(821)

HH-groupGIY-YIG endonuclease(821.1)

TT-groupGIY-YIG endonuclease(821.1.1)

FFamilyGIY-YIG(821.1.1.1)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer.

Pfam Families

PF01541GIY-YIG

GIY-YIG catalytic domain

ClanCL0418GIY-YIG

External Links

ECOD PDB View: 1MK0 RCSB PDB: 1MK0 PDBe: 1MK0 UniProt: P13299

Downloads

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Drug annotations from DrugDomain.