ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r89A3 - ECOD Domain | ECOD

ECOD/Domains/e1r89A3

e1r89A3

UID: 000006816

RepresentativePDB

Range: A:1-142
PDB: 1R89 chain A(all domains)
UniProt: O28126 (all domains)
Gene: cca

Molecule: tRNA nucleotidyltransferase

3D Structure

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Related Domains

Browse other domains in NTP_transf_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyNTP_transf_2(316.1.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
CYTIDINE-5'-TRIPHOSPHATECTP
Magnesium ionMG
metal
MANGANESE (II) ION

Pfam Families

PF01909NTP_transf_2

Nucleotidyltransferase domain

ClanCL0260NTP_transf

External Links

ECOD PDB View: 1R89 RCSB PDB: 1R89 PDBe: 1R89 UniProt: O28126

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.