ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1m6kA2 - ECOD Domain | ECOD

ECOD/Domains/e1m6kA2

e1m6kA2

UID: 000006896

RepresentativePDB

Range: A:18-62,A:167-274
PDB: 1M6K chain A(all domains)
UniProt: P13661 (all domains)
Gene: OXA-1

Molecule: beta-lactamase OXA-1

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 1M6K RCSB PDB: 1M6K PDBe: 1M6K UniProt: P13661

Downloads

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