ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2f2lA1 - ECOD Domain | ECOD

ECOD/Domains/e2f2lA1

e2f2lA1

UID: 000006950

RepresentativePDB

Range: A:355-520
PDB: 2F2L chain A(all domains)
UniProt: Q9GNK5 (all domains)
Gene: PGRP-LC

Molecule: Peptidoglycan-recognition protein-LC isoform LCa

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2-ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELYL-D-ALANINEMLD
drugDrugBank DB04736
N-AcetylglucosamineNAG

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 2F2L RCSB PDB: 2F2L PDBe: 2F2L UniProt: Q9GNK5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB00141

2-acetylamino-2-deoxy-alpha-L-idopyranoseHSQ

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.