ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1pf5A1 - ECOD Domain | ECOD

ECOD/Domains/e1pf5A1

e1pf5A1

UID: 000006993

RepresentativePDB

Range: A:2-131
PDB: 1PF5 chain A(all domains)
UniProt: P39332 (all domains)
Gene: yjgH

Molecule: Hypothetical protein yjgH

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribonuc_L-PSP →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupYjgF-like(301.7)

TT-groupYjgF-like(301.7.1)

FFamilyRibonuc_L-PSP(301.7.1.1)

Ligands

in contact, ≤ 4 Å

MERCURY (II) IONHG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01042Ribonuc_L-PSP

Endoribonuclease L-PSP

ClanCL0534YjgF-like

External Links

ECOD PDB View: 1PF5 RCSB PDB: 1PF5 PDBe: 1PF5 UniProt: P39332

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure