ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rdqE1 - ECOD Domain | ECOD

ECOD/Domains/e1rdqE1

e1rdqE1

UID: 000007067

RepresentativePDB

Range: E:1-350
PDB: 1RDQ chain E(all domains)
UniProt: P05132 (all domains)
Gene: Prkaca

Molecule: cAMP-dependent protein kinase, alpha-catalytic subunit

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
ATPATP
drugDrugBank DB00171
Magnesium ion

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 1RDQ RCSB PDB: 1RDQ PDBe: 1RDQ UniProt: P05132

Downloads

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metal

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.