ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c37N2 - ECOD Domain | ECOD

ECOD/Domains/e2c37N2

e2c37N2

UID: 000071408

PDB

Range: N:8-155
PDB: 2C37 chain N(all domains)
UniProt: Q9UXC2 (all domains)
Gene: rrp41

Molecule: PROBABLE EXOSOME COMPLEX EXONUCLEASE 1

3D Structure

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Related Domains

Browse other domains in RNase_PH →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyRNase_PH(212.1.1.10)

Ligands

in contact, ≤ 4 Å

beta-D-Ribose-5-phosphateRP5
drugDrugBank DB04352within 5 Å only
Uridine monophosphateU5P
drugDrugBank DB03685

Pfam Families

PF01138RNase_PH

3' exoribonuclease family, domain 1

ClanCL0329S5

External Links

ECOD PDB View: 2C37 RCSB PDB: 2C37 PDBe: 2C37 UniProt: Q9UXC2

Downloads

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within 5 Å only

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.