ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yhcB1 - ECOD Domain | ECOD

ECOD/Domains/e1yhcB1

e1yhcB1

UID: 000071495

PDB

Range: B:3-127
PDB: 1YHC chain B(all domains)
UniProt: O67648 (all domains)
Gene: lpxC

Molecule: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in LpxC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyLpxC(212.1.1.15)

Ligands

in contact, ≤ 4 Å

Palmitoleic AcidPAM
drugDrugBank DB04257
Chloride ionCL
Zinc ionZN

Pfam Families

UDP-3-O-acyl N-acetylglycosamine deacetylase

ClanCL0329S5

External Links

ECOD PDB View: 1YHC RCSB PDB: 1YHC PDBe: 1YHC UniProt: O67648

Downloads

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metal

+ 2 additives (Sulfate ion, Cacodylate ion)

Sulfate ionSO4
DrugBank DB14546
Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.