ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nddD1 - ECOD Domain | ECOD

ECOD/Domains/e1nddD1

e1nddD1

UID: 000072040

PDB

Range: D:301-373
PDB: 1NDD chain D(all domains)
UniProt: Q15843 (all domains)
Gene: NEDD8

Molecule: PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8)

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 1NDD RCSB PDB: 1NDD PDBe: 1NDD UniProt: Q15843

Downloads

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