ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1k5cA1 - ECOD Domain | ECOD

ECOD/Domains/e1k5cA1

e1k5cA1

UID: 000007216

RepresentativePDB

Range: A:3-335
PDB: 1K5C chain A(all domains)
UniProt: P79074 (all domains)
Gene: cppg1

Molecule: ENDOPOLYGALACTURONASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_28 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyGlyco_hydro_28(207.2.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Chloride ionCL

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF00295Glyco_hydro_28

Glycosyl hydrolases family 28

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 1K5C RCSB PDB: 1K5C PDBe: 1K5C UniProt: P79074

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.