ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1h80A1 - ECOD Domain | ECOD

ECOD/Domains/e1h80A1

e1h80A1

UID: 000007219

RepresentativePDB

Range: A:28-313,A:335-491
PDB: 1H80 chain A(all domains)
UniProt: Q9F5I8 (all domains)
Gene: cgiA

Molecule: IOTA-CARRAGEENASE

3D Structure

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Related Domains

Browse other domains in Pectate_lyase_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPectate_lyase_3(207.2.1.20)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
Sodium ionNA
metal

Pfam Families

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 1H80 RCSB PDB: 1H80 PDBe: 1H80 UniProt: Q9F5I8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.