ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ru4A1 - ECOD Domain | ECOD

ECOD/Domains/e1ru4A1

e1ru4A1

UID: 000007220

RepresentativePDB

Range: A:26-425
PDB: 1RU4 chain A(all domains)
UniProt: P0C1A7 (all domains)
Gene: pelL

Molecule: Pectate lyase

3D Structure

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Related Domains

Browse other domains in Pel9A-like_beta_helix →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPel9A-like_beta_helix(207.2.1.33)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22842Pel9A-like_beta_helix

Pel9A-like, right handed beta helix region

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 1RU4 RCSB PDB: 1RU4 PDBe: 1RU4 UniProt: P0C1A7

Downloads

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