ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vkpA1 - ECOD Domain | ECOD

ECOD/Domains/e1vkpA1

e1vkpA1

UID: 000007265

RepresentativePDB

Range: A:5-376
PDB: 1VKP chain A(all domains)
UniProt: Q8GWW7 (all domains)
Gene: AIH

Molecule: AGMATINE IMINOHYDROLASE

3D Structure

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Related Domains

Browse other domains in PAD_porph →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPentein(232)

HH-groupPentein(232.1)

TT-groupPentein(232.1.1)

FFamilyPAD_porph(232.1.1.4)

Ligands

in contact, ≤ 4 Å

3-(N-morpholino)propanesulfonic acidMPO
drugDrugBank DB03434
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF04371PAD_porph

Porphyromonas-type peptidyl-arginine deiminase

ClanCL0197GME

External Links

ECOD PDB View: 1VKP RCSB PDB: 1VKP PDBe: 1VKP UniProt: Q8GWW7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.