ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1qvjA1 - ECOD Domain | ECOD

ECOD/Domains/e1qvjA1

e1qvjA1

UID: 000072720

PDB

Range: A:59-350
PDB: 1QVJ chain A(all domains)
UniProt: Q9BW91 (all domains)
Gene: NUDT9

Molecule: ADP-ribose pyrophosphatase

3D Structure

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Related Domains

Browse other domains in NUDIX, NUDT9_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX, NUDT9_N(221.4.1.23)

Ligands

in contact, ≤ 4 Å

beta-D-Ribose-5-phosphateRP5
drugDrugBank DB04352
Magnesium ionMG
metal

+ 2 additives (Sulfate ion, Tromethamine)

Pfam Families

NUDIX domain

ClanCL0261NUDIX

PF25969NUDT9_N

NUDT9-like, N-terminal domain

External Links

ECOD PDB View: 1QVJ RCSB PDB: 1QVJ PDBe: 1QVJ UniProt: Q9BW91

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.