ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1m5qO2 - ECOD Domain | ECOD

ECOD/Domains/e1m5qO2

e1m5qO2

UID: 000073603

PDB

Range: O:77-137
PDB: 1M5Q chain O(all domains)
UniProt: Q8ZVU2 (all domains)
Gene: PAE2122

Molecule: small nuclear ribonucleoprotein homolog

3D Structure

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Related Domains

Browse other domains in Lsm_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupSm-Like archaeal protein Smap3, C-terminal domain(3006)

HH-groupSm-Like archaeal protein Smap3, C-terminal domain(3006.1)

TT-groupSm-Like archaeal protein Smap3, C-terminal domain(3006.1.1)

FFamilyLsm_C(3006.1.1.1)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY
DrugBank DB03166
Glycerin

Pfam Families

Lsm C-terminal

External Links

ECOD PDB View: 1M5Q RCSB PDB: 1M5Q PDBe: 1M5Q UniProt: Q8ZVU2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.