ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2gkeA2 - ECOD Domain | ECOD

ECOD/Domains/e2gkeA2

e2gkeA2

UID: 000007492

RepresentativePDB

Range: A:131-274
PDB: 2GKE chain A(all domains)
UniProt: P44859 (all domains)
Gene: dapF

Molecule: Diaminopimelate epimerase

3D Structure

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Related Domains

Browse other domains in DAP_epimerase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupDiaminopimelate epimerase-like(286)

HH-groupDiaminopimelate epimerase-like(286.1)

TT-groupDiaminopimelate epimerase-like(286.1.1)

FFamilyDAP_epimerase(286.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACIDZDP

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY
DrugBank DB03166
GlycerinGOL

Pfam Families

PF01678DAP_epimerase

Diaminopimelate epimerase

ClanCL0288DAP_epimerase

External Links

ECOD PDB View: 2GKE RCSB PDB: 2GKE PDBe: 2GKE UniProt: P44859

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.