ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rl4A1 - ECOD Domain | ECOD

ECOD/Domains/e1rl4A1

e1rl4A1

UID: 000007506

RepresentativePDB

Range: A:66-230
PDB: 1RL4 chain A(all domains)
UniProt: Q8I372 (all domains)
Gene: PF3D7_0907900

Molecule: formylmethionine deformylase

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S,2'S)-2,2'-(1,2-Hydrazinediylbis{methylene[(2S)-1-oxo-2,1-hexanediyl]imino})bis(6-amino-N-phenylhexanamide)BL5
drugDrugBank DB03648
(2r)-2-{[Formyl(Hydroxy)Amino]Methyl}Hexanoic AcidBRR

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 1RL4 RCSB PDB: 1RL4 PDBe: 1RL4 UniProt: Q8I372

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drug

DrugBank DB02625

COBALT (II) IONCO

metal

Shown in the structure viewer. Drug annotations from DrugDomain.