ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1jmjA1 - ECOD Domain | ECOD

ECOD/Domains/e1jmjA1

e1jmjA1

UID: 000007644

RepresentativePDB

Range: A:61-71,A:95-480
PDB: 1JMJ chain A(all domains)
UniProt: P05546 (all domains)
Gene: SERPIND1

Molecule: HEPARIN COFACTOR II

3D Structure

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Related Domains

Browse other domains in Serpin →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupSerpins(4059)

HH-groupSerpins(4059.1)

TT-groupSerpins(4059.1.1)

FFamilySerpin(4059.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Serpin (serine protease inhibitor)

External Links

ECOD PDB View: 1JMJ RCSB PDB: 1JMJ PDBe: 1JMJ UniProt: P05546

Downloads

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