ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1efnD1 - ECOD Domain | ECOD

ECOD/Domains/e1efnD1

e1efnD1

UID: 000077931

PDB

Range: D:71-148,D:178-203
PDB: 1EFN chain D(all domains)
UniProt: P03406 (all domains)
Gene: nef

Molecule: HIV-1 NEF PROTEIN

3D Structure

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Related Domains

Browse other domains in F-protein →

Classification

AArchitecturea+b three layers(a.12)

XX-groupRegulatory factor Nef(836)

HH-groupRegulatory factor Nef(836.1)

TT-groupRegulatory factor Nef(836.1.1)

FFamilyF-protein(836.1.1.1)

Ligands

in contact, ≤ 4 Å

Trimethyl lead ionPBM

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00469F-protein

Negative factor, (F-Protein) or Nef

External Links

ECOD PDB View: 1EFN RCSB PDB: 1EFN PDBe: 1EFN UniProt: P03406

Downloads

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