ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1j9mA2 - ECOD Domain | ECOD

ECOD/Domains/e1j9mA2

e1j9mA2

UID: 000078420

PDB

Range: A:3-30,A:151-261
PDB: 1J9M chain A(all domains)
UniProt: P39042 (all domains)

Molecule: DD-transpeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S11(223.3.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 1J9M RCSB PDB: 1J9M PDBe: 1J9M UniProt: P39042

Downloads

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