ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1w8yB3 - ECOD Domain | ECOD

ECOD/Domains/e1w8yB3

e1w8yB3

UID: 000078792

PDB

Range: B:1-44,B:354-465
PDB: 1W8Y chain B(all domains)
UniProt: P39045 (all domains)
Gene: dac

Molecule: D-alanyl-D-alanine carboxypeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_S13 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S13(223.3.1.6)

Ligands

in contact, ≤ 4 Å

(2R)-2-{(1R)-2-oxo-1-[(2-thienylacetyl)amino]ethyl}-5,6-dihydro-2h-1,3-thiazine-4-carboxylic acidNCF
drugDrugBank DB04742

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02113Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 1W8Y RCSB PDB: 1W8Y PDBe: 1W8Y UniProt: P39045

Downloads

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