ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2nudB2 - ECOD Domain | ECOD

ECOD/Domains/e2nudB2

e2nudB2

UID: 000078806

PDB

Range: B:119-218
PDB: 2NUD chain B(all domains)
UniProt: P13835 (all domains)
Gene: avrB

Molecule: Avirulence B protein

3D Structure

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Related Domains

Browse other domains in AvrB_AvrC →

Classification

AArchitecturea+b three layers(a.12)

XX-groupa+b domain in antivirulence factor(4058)

HH-groupa+b domain in antivirulence factor(4058.1)

TT-groupa+b domain in antivirulence factor(4058.1.1)

FFamilyAvrB_AvrC(4058.1.1.1)

Ligands

in contact, ≤ 4 Å

TrifluoroethanolETF
drugDrugBank DB03226within 5 Å only

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Pfam Families

PF05394AvrB_AvrC

Avirulence protein

External Links

ECOD PDB View: 2NUD RCSB PDB: 2NUD PDBe: 2NUD UniProt: P13835

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.