ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vybA1 - ECOD Domain | ECOD

ECOD/Domains/e1vybA1

e1vybA1

UID: 000007881

RepresentativePDB

Range: A:3-238
PDB: 1VYB chain A(all domains)
UniProt: Q8TE30 (all domains)

Molecule: ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN

3D Structure

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Related Domains

Browse other domains in Exo_endo_phos →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupDNase I-like(246.3)

TT-groupDNase I-like(246.3.1)

FFamilyExo_endo_phos(246.3.1.1)

Ligands

in contact, ≤ 4 Å

Sulfite ionSO3

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Pfam Families

PF03372Exo_endo_phos

Endonuclease/Exonuclease/phosphatase family

ClanCL0530DNase_I-like

External Links

ECOD PDB View: 1VYB RCSB PDB: 1VYB PDBe: 1VYB UniProt: Q8TE30

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.