ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1w55A1 - ECOD Domain | ECOD

ECOD/Domains/e1w55A1

e1w55A1

UID: 000079213

PDB

Range: A:209-366
PDB: 1W55 chain A(all domains)
UniProt: Q9PM68 (all domains)
Gene: ispDF

Molecule: ISPD/ISPF BIFUNCTIONAL ENZYME

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Geranyl DiphosphateGPP
drugDrugBank DB02552
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YgbB family

External Links

ECOD PDB View: 1W55 RCSB PDB: 1W55 PDBe: 1W55 UniProt: Q9PM68

Downloads

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