ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1gx1B1 - ECOD Domain | ECOD

ECOD/Domains/e1gx1B1

e1gx1B1

UID: 000079215

PDB

Range: B:0-156
PDB: 1GX1 chain B(all domains)
UniProt: P62617 (all domains)
Gene: ispF

Molecule: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555
MANGANESE (II) IONMN
metal
Zinc ion

Pfam Families

YgbB family

External Links

ECOD PDB View: 1GX1 RCSB PDB: 1GX1 PDBe: 1GX1 UniProt: P62617

Downloads

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metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.