ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1qd9B1 - ECOD Domain | ECOD

ECOD/Domains/e1qd9B1

e1qd9B1

UID: 000079307

PDB

Range: B:2-125
PDB: 1QD9 chain B(all domains)
UniProt: P37552 (all domains)
Gene: ridA

Molecule: PURINE REGULATORY PROTEIN YABJ

3D Structure

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Related Domains

Browse other domains in Ribonuc_L-PSP →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupYjgF-like(301.7)

TT-groupYjgF-like(301.7.1)

FFamilyRibonuc_L-PSP(301.7.1.1)

Ligands

in contact, ≤ 4 Å

Ethyl mercury ionEMC

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01042Ribonuc_L-PSP

Endoribonuclease L-PSP

ClanCL0534YjgF-like

External Links

ECOD PDB View: 1QD9 RCSB PDB: 1QD9 PDBe: 1QD9 UniProt: P37552

Downloads

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