ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2otmB1 - ECOD Domain | ECOD

ECOD/Domains/e2otmB1

e2otmB1

UID: 000079362

PDB

Range: B:2-153
PDB: 2OTM chain B(all domains)
UniProt: Q8EFL1 (all domains)
Gene: SO_1960

Molecule: Hypothetical protein

3D Structure

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Related Domains

Browse other domains in YjgF_endoribonc →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupYjgF-like(301.7)

TT-groupYjgF-like(301.7.1)

FFamilyYjgF_endoribonc(301.7.1.4)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Calcium ionCA
metalwithin 5 Å only

+ 2 additives (Acetate, Glycerin)

AcetateACT

Pfam Families

PF14588YjgF_endoribonc

YjgF/chorismate_mutase-like, putative endoribonuclease

ClanCL0534YjgF-like

External Links

ECOD PDB View: 2OTM RCSB PDB: 2OTM PDBe: 2OTM UniProt: Q8EFL1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.