ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1e24A2 - ECOD Domain | ECOD

ECOD/Domains/e1e24A2

e1e24A2

UID: 000079457

PDB

Range: A:161-502
PDB: 1E24 chain A(all domains)
UniProt: P0A8N5 (all domains)
Gene: lysU

Molecule: LYSYL-TRNA SYNTHETASE

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
LysineLYS
drugDrugBank DB00123
MANGANESE (II) ION

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 1E24 RCSB PDB: 1E24 PDBe: 1E24 UniProt: P0A8N5

Downloads

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metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.