ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1g9uA1 - ECOD Domain | ECOD

ECOD/Domains/e1g9uA1

e1g9uA1

UID: 000080993

PDB

Range: A:34-386
PDB: 1G9U chain A(all domains)
UniProt: P17778 (all domains)
Gene: yopM

Molecule: OUTER PROTEIN YOPM

3D Structure

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Related Domains

Browse other domains in LRR_1, LRR_TTSS →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupLeucine-rich repeats(207.1)

TT-groupLeucine-rich repeats(207.1.1)

FFamilyLRR_1, LRR_TTSS(207.1.1.199)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
MERCURY (II) IONHG
metal

+ 1 additive (Acetate ion)

Acetate ion

Pfam Families

Leucine Rich Repeat

ClanCL0022LRR

PF12468LRR_TTSS

Type III secretion system leucine rich repeat protein

ClanCL0022LRR

External Links

ECOD PDB View: 1G9U RCSB PDB: 1G9U PDBe: 1G9U UniProt: P17778

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.