ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1m3dE1 - ECOD Domain | ECOD

ECOD/Domains/e1m3dE1

e1m3dE1

UID: 000081986

PDB

Range: E:6-114
PDB: 1M3D chain E(all domains)
UniProt: Q7SIB2 (all domains)
Gene: COL4A1

Molecule: Type IV Collagen Noncollagenous Domain- Alpha1

3D Structure

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Related Domains

Browse other domains in C4 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupNoncollagenous (NC1) domain of collagen IV(352)

HH-groupNoncollagenous (NC1) domain of collagen IV(352.1)

TT-groupNoncollagenous (NC1) domain of collagen IV(352.1.1)

FFamilyC4(352.1.1.1)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
LUTETIUM (III) IONLU
metalwithin 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

C-terminal tandem repeated domain in type 4 procollagen

ClanCL0056C_Lectin

External Links

ECOD PDB View: 1M3D RCSB PDB: 1M3D PDBe: 1M3D UniProt: Q7SIB2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.