ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1g8tA1 - ECOD Domain | ECOD

ECOD/Domains/e1g8tA1

e1g8tA1

UID: 000008231

RepresentativePDB

Range: A:5-245
PDB: 1G8T chain A(all domains)
UniProt: P13717 (all domains)
Gene: nucA

Molecule: NUCLEASE SM2 ISOFORM

3D Structure

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Related Domains

Browse other domains in Endonuclease_NS →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupHis-Me finger endonucleases(378)

HH-groupHis-Me finger endonucleases(378.1)

TT-groupHis-Me finger endonucleases(378.1.1)

FFamilyEndonuclease_NS(378.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01223Endonuclease_NS

DNA/RNA non-specific endonuclease

ClanCL0263His-Me_finger

External Links

ECOD PDB View: 1G8T RCSB PDB: 1G8T PDBe: 1G8T UniProt: P13717

Downloads

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