ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2d1iB1 - ECOD Domain | ECOD

ECOD/Domains/e2d1iB1

e2d1iB1

UID: 000082705

PDB

Range: B:10-190,B:216-354
PDB: 2D1I chain B(all domains)
UniProt: Q9Y4P1 (all domains)
Gene: ATG4B

Molecule: Cysteine protease APG4B

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_C54 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C54(219.1.1.19)

Pfam Families

PF03416Peptidase_C54

Peptidase C54 catalytic domain

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 2D1I RCSB PDB: 2D1I PDBe: 2D1I UniProt: Q9Y4P1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure