ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2fd6U2 - ECOD Domain | ECOD

ECOD/Domains/e2fd6U2

e2fd6U2

UID: 000008275

RepresentativePDB

Range: U:189-275
PDB: 2FD6 chain U(all domains)
UniProt: Q03405 (all domains)
Gene: PLAUR

Molecule: Urokinase plasminogen activator surface receptor

3D Structure

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Related Domains

Browse other domains in UPAR_LY6 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupSnake toxin-like(382)

HH-groupSnake toxin-like(382.1)

TT-groupSnake toxin-like(382.1.1)

FFamilyUPAR_LY6(382.1.1.1)

Ligands

in contact, ≤ 4 Å

2-EthoxyethanolETX
drugDrugBank DB02249
N-acetyl-alpha-D-glucosamineNDG
drugDrugBank DB03740

+ 2 additives (Triethylene glycol, Tetraethylene glycol)

Pfam Families

PF00021UPAR_LY6

u-PAR/Ly-6 domain

ClanCL0117uPAR_Ly6_toxin

External Links

ECOD PDB View: 2FD6 RCSB PDB: 2FD6 PDBe: 2FD6 UniProt: Q03405

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE
DrugBank DB02327
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.