ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dwkA3 - ECOD Domain | ECOD

ECOD/Domains/e3dwkA3

e3dwkA3

UID: 000083851

PDB

Range: A:71-290
PDB: 3DWK chain A(all domains)
UniProt: Q8KHY3 (all domains)
Gene: pbpB

Molecule: Penicillin-binding protein 2

3D Structure

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Related Domains

Browse other domains in Transgly →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilyTransgly(235.1.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Dodecyldimethylamine N-oxide, Sulfate ion)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147within 5 Å only
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00912Transgly

Transglycosylase

ClanCL0037Lysozyme

External Links

ECOD PDB View: 3DWK RCSB PDB: 3DWK PDBe: 3DWK UniProt: Q8KHY3

Downloads

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