ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1bsjA1 - ECOD Domain | ECOD

ECOD/Domains/e1bsjA1

e1bsjA1

UID: 000084823

PDB

Range: A:1-164
PDB: 1BSJ chain A(all domains)
UniProt: P0A6K3 (all domains)
Gene: def

Molecule: PROTEIN (PEPTIDE DEFORMYLASE)

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

(S)-2-(Phosphonoxy)Caproyl-L-Leucyl-P-NitroanilideMLN
drugDrugBank DB02276
COBALT (II) IONCO
metal

+ 1 additive (Phosphate ion)

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 1BSJ RCSB PDB: 1BSJ PDBe: 1BSJ UniProt: P0A6K3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.