ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1y6hB1 - ECOD Domain | ECOD

ECOD/Domains/e1y6hB1

e1y6hB1

UID: 000084843

PDB

Range: B:1-177
PDB: 1Y6H chain B(all domains)
UniProt: Q93LE9 (all domains)
Gene: def

Molecule: Peptide deformylase

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
Zinc ionZN
metal

+ 1 additive (Formic acid)

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 1Y6H RCSB PDB: 1Y6H PDBe: 1Y6H UniProt: Q93LE9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Formic acid

DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.