ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dxjC7 - ECOD Domain | ECOD

ECOD/Domains/e3dxjC7

e3dxjC7

UID: 000085968

PDB

Range: C:999-1118
PDB: 3DXJ chain C(all domains)
UniProt: Q8RQE9 (all domains)
Gene: rpoB

Molecule: BACTERIAL RNA POLYMERASE BETA SUBUNIT; CHAIN C, M

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_7 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupC-terminal domain in beta subunit of DNA dependent RNA-polymerase(4043)

HH-groupC-terminal domain in beta subunit of DNA dependent RNA-polymerase(4043.1)

TT-groupC-terminal domain in beta subunit of DNA dependent RNA-polymerase(4043.1.1)

FFamilyRNA_pol_Rpb2_7(4043.1.1.2)

Ligands

in contact, ≤ 4 Å

Methyl [(1E,5R)-5-{3-[(2E,4E)-2,5-dimethyl-2,4-octadienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hexylidene]carbamateNE6
drugDrugBank DB08266

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Pfam Families

PF04560RNA_pol_Rpb2_7

RNA polymerase Rpb2, domain 7

External Links

ECOD PDB View: 3DXJ RCSB PDB: 3DXJ PDBe: 3DXJ UniProt: Q8RQE9

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.