ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4bdyA1 - ECOD Domain | ECOD

ECOD/Domains/e4bdyA1

e4bdyA1

UID: 000865122

PDB

Range: A:119-322
PDB: 4BDY chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: INTEGRASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

2-(3-chloro-4-fluorobenzyl)-4,5-dihydroxy-1H-isoindole-1,3(2H)-dioneCIJ
Magnesium ionMG
metal

+ 2 additives (Glycerin, Sulfate ion)

Glycerin

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4BDY RCSB PDB: 4BDY PDBe: 4BDY UniProt: P14350

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.