ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pyjB3 - ECOD Domain | ECOD

ECOD/Domains/e2pyjB3

e2pyjB3

UID: 000086601

PDB

Range: B:262-357
PDB: 2PYJ chain B(all domains)
UniProt: P03680 (all domains)
Gene: 2

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_2 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupinsertion domain in bacteriophage phi29 DNA polymerase(4968)

HH-groupinsertion domain in bacteriophage phi29 DNA polymerase(4968.1)

TT-groupinsertion domain in bacteriophage phi29 DNA polymerase(4968.1.1)

FFamilyDNA_pol_B_2(4968.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03175DNA_pol_B_2

DNA polymerase type B, organellar and viral

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 2PYJ RCSB PDB: 2PYJ PDBe: 2PYJ UniProt: P03680

Downloads

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