ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1jpmA2 - ECOD Domain | ECOD

ECOD/Domains/e1jpmA2

e1jpmA2

UID: 000008684

RepresentativePDB

Range: A:126-359
PDB: 1JPM chain A(all domains)
UniProt: O34508 (all domains)
Gene: ykfB

Molecule: L-Ala-D/L-Glu Epimerase

3D Structure

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Related Domains

Browse other domains in MR_MLE_C →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyMR_MLE_C(2002.1.1.174)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13378MR_MLE_C

Enolase C-terminal domain-like

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1JPM RCSB PDB: 1JPM PDBe: 1JPM UniProt: O34508

Downloads

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