ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yolA1 - ECOD Domain | ECOD

ECOD/Domains/e2yolA1

e2yolA1

UID: 000868787

PDB

Range: A:47-1169
PDB: 2YOL chain A(all domains)
UniProt: P06935 (all domains)

Molecule: SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3

3D Structure

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Related Domains

Browse other domains in Peptidase S7, Flavivirus NS3 serine protease / Flavivirus non-structural protein NS2B →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase S7, Flavivirus NS3 serine protease / Flavivirus non-structural protein NS2B(1.1.5.7)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4-guanidinocyclohexyl)methylamino)-1-oxohexan-2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamideEBN
NICKEL (II) IONNI

Pfam Families

PF00949Peptidase_S7

Peptidase S7, Flavivirus NS3 serine protease

ClanCL0124Peptidase_PA

PF01002Flavi_NS2B

Flavivirus non-structural protein NS2B

External Links

ECOD PDB View: 2YOL RCSB PDB: 2YOL PDBe: 2YOL UniProt: P06935

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.