ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ikfB1 - ECOD Domain | ECOD

ECOD/Domains/e4ikfB1

e4ikfB1

UID: 000869226

PDB

Range: B:116-299
PDB: 4IKF chain B(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Hexane-1,6-DiolHEZ
drugDrugBank DB02210

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4IKF RCSB PDB: 4IKF PDBe: 4IKF UniProt: P14350

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.